Stoeger announced his departure immediately after Dortmund's 4-1 defeat to Hoffenheim, reports Xinhua news agency.
"This was my last game at Dortmund's sideline. We have already mutually agreed that a new impulse is necessary and will help the club," Stoeger said on Saturday evening.
The 52-year-old Austrian coach took the reins in December after the BVB sacked coach Peter Bosz following a two-month winless streak in the league.
Stoeger, who signed a short-term contract until the end of the season, was in charge for overall 19 games. He reaped nine victories, six draws and four defeats.
Dortmund have not announced a successor yet. However, Nice coach Lucien Favre is said to be the favourite for the Dortmund job.
(This story has not been edited by Social News XYZ staff and is auto-generated from a syndicated feed.)
